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Publications

2025

  • XopAE Effector from Xanthomonas phaseoli pv. manihotis Targets HSP20-Like p23 Cochaperone to Suppress Plant Basal Immunity

Diana Gomez De la Cruz, Darwin A. Castillo, Cesar A. Trujillo B., Cesar A. Medina, Valentina Hurtado, Juliana Gil, Meenu Padmanabhan, Silvia Restrepo, Savithramma P. Dinesh-Kumar, Hugo Germain, Camilo Lopez, and Adriana Bernal

https://doi.org/10.1094/MPMI-08-24-0086-R

  • Genome mining to elucidate antimicrobial and plant growth promoting potentials in Lactic acid bacteria

Christian Vargas, Lina Botero, Edwin Rodriguez, Lorena Dávila, Camilo Racedo, Claudia Barrera, Adriana J. Bernal, Hugo Jiménez, Paola Zuluaga & Carolina González

https://doi.org/10.1007/s10658-024-02984-0

2024

  • First Report of Cassava Bacterial Blight Caused by Xanthomonas phaseoli pv. Manihot in the Amazonian Forest of Ecuador

Carlos A Zárate-Chaves, Yassine Moufid, Camilo E López, Adriana Bernal, Boris Szurek, Jeniffer M Yánez

https://doi.org/10.1094/PDIS-10-23-2111-PDN

  • Seguridad alimentaria y cambio climático en las comunidades: experiencias y voces en la construcción de puentes entre la ciencia y el conocimiento local en el Centro de Investigación en Sistemas Agroalimentarios de la Universidad de los Andes - Centro ISA

Mendoza, M., Montenegro, Y. A. ., Marbello, A., Reyes, P., Cárdenas Toquica, M. E., Bernal, A., Pulecio Mendez, C. A., & Mideros Bastidas, M. F.

https://doi.org/10.53010/nys.dia.03

  • Uso de la biodiversidad para mejorar la agricultura: tendencias en la investigación y el mercado en biofertilizantes en Colombia.

Reyes, P. ., Oliveros, J. ., Racedo, C., & Bernal Giraldo, A.

https://doi.org/10.53010/nys10.06

2023

  • A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis

Rache, L., Blondin, L., Diaz Tatis, P., Flores, C., Camargo, A., Kante, M., Wonni, I., López, C., Szurek, B., Dupas, S., Pruvost, O., Koebnik, R., Restrepo, S., Bernal, A., Verniere, C.

https://doi.org/10.1371/journal.pone.0285491

  • CRISPRi in Xanthomonas demonstrates functional convergence of transcription activator-like effectors in two divergent pathogens

Zarate-Chaves, C., Audran, C., Medina Culma, C., Escalon, A., Javegny, S., Gagnevin, L., Thomas, E., Pimparel., L., López, C., Jacobs, J., Noel, L., Koebnik, R., Bernal, AJ., Szurek, B.

 https://doi.org/10.1111/nph.18808

2022

  • Multicenter international assessment of a SARS-CoV-2 RT-LAMP test for point of care clinical application

Luuu S, Duplat D, Benitez P, Leon C, Villota S, Veloz-Villavicencio E, Arevalo V, Jaenes K, Guoo Y, Cicek S, Robinson L, Peidis P, Pearson J, Woodgett J, Mazzulli T, Ponce P, Restrepo S, Gonzalez J, Bernal A, Guevara M, Pardee K, Cevallos V, González C, Bremner R.

https://doi.org/10.1371/journal.pone.0268340

  • Complete Genome Sequence of Xanthomonas campestris pv. campestris SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey

Meral S, Bibi S, Diaz C, Menkovic J, Bernal A, Koebnik R.

https://doi.org/10.1128/mra.00022-22

  • Complete Genome Sequence Resource for Xanthomonas translucens pv. undulosa MAI5034, a Wheat Pathogen from Uruguay

Bernal A, Barrera C, Clavijo F, Benčič A., Croce V, Jacobs J, Koebnik R, Roman-Reyna V.

https://doi.org/10.1094/PHYTO-01-22-0025-A

2021

  • A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans.

Ayala-Usma DA, Cárdenas M, Guyot R, Mares MC, Bernal A, Muñoz AR, Restrepo S

https://doi.org/10.1371/journal.pone.0268340

  • Cassava diseases caused by Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae

Carlos A. Zárate-Chaves, Diana Gómez de la Cruz, Valérie Verdier, Camilo E. López, Adriana Bernal, Boris Szurek

 https://doi.org/10.1111/mpp.13094

  • TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale

Zárate-Chaves, C.A.; Osorio-Rodríguez, D.; Mora, R.E.; Pérez-Quintero, Á.L.; Dereeper, A.; Restrepo, S.; López, C.E.; Szurek, B.; Bernal, A.

https://doi.org/10.3390/microorganisms9020315

  • The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility

Montenegro Benavides, N. A., Alvarez B, A., Arrieta-Ortiz, M. L., Rodriguez-R, L. M., Botero, D., Tabima, J. F., Castiblanco, L., Trujillo, C., Restrepo, S., & Bernal, A

https://doi.org/10.1186/s12866-020-02066-1

2020

  • Genome-Scale Metabolic Model of Xanthomonas phaseoli pv. manihotis: An Approach to Elucidate Pathogenicity at the Metabolic Level

Botero, D., Monk, J., Rodriguez-Cubillos, M.J., Rodríguez-Cubillos, A., Restrepo, M., Bernal-Galeano, V., Reyes, A., Gonzalez-Barrios, A., Palsson, B.O. Restrepo, S., Bernal, A.

 https://doi.org/10.3389/fgene.2020.00837

  • Resistance and susceptibility to Xanthomonas phaseoli pv. manihotis in cassava: A transcriptomic comparison (or two sides of the same coin)

Ramírez, E., Dereeper, A., Bernal, A., Szurek, B., López, C.

https://doi.org/10.1016/j.pmpp.2020.101535

  • Effector Repertoire of Phytophthora betacei: In Search of Possible Virulence Factors Responsible for Its Host Specificity

Rojas-Estevez, P., Urbina-Gomez, D., Ayala-Usma, D.A., Guayazan-Palacios, N., Mideros, M.F., Bernal, A.J., Cárdenas, M., Restrepo, S.

https://doi.org/10.3389/fgene.2020.00579

  • Phytobiomes, the Reason Why Microbiologists and Botanists Should Work Together

Snoeijenbos, M., Cárdenas, M., Guevara-Suarez, M., Bernal, A., Jiménez, P., Restrepo, S.

 https://doi.org/10.1002/9781119312994.apr0699

2019

  • Variations in carotenoid content and acyl chain composition in exponential, stationary and biofilm states of Staphylococcus aureus, and their influence on membrane biophysical properties

Perez-Lopez, M.I. Mendez- Reina, R., Trier, S., Herrfurth, C., Feussner, I., Bernal, A., Forero-Shelton, M., Leidy, C.

https://doi.org/10.1016/j.bbamem.2019.02.001

  • An optimized microsatellite scheme for assessing populations of Xanthomonas phaseoli pv. manihotis. Phytopathology.

Rache, L., Blondin, L., Flores, C., Trujillo, C., Szurek, B., Restrepo, S., Koebnik, R., Bernal, A., Verniere, C.

https://doi.org/10.1094/PHYTO-06-18-0210-R

2018

  • Network Analyses in Plant Pathogens

Botero, D.O., Alvarado, C., Bernal, A., Danies, G., Restrepo, S.

https://doi.org/10.3389/fmicb.2018.00035

  • The role of type three effectors from Xanthomonas axonopodis pv. manihotis in virulence and suppression of plant immunity.

Medina, C., Reyes, P., Trujillo, C., Gonzalez, J., Bejarano, D., Montenegro, N., Jacobz, J., Joe, A., Restrepo, S., Alfano, J., Bernal, A.

 https://doi.org/10.1111/mpp.12545

2016

  • Infección de callo embriogénico friable de yuca con Xanthomonas axonopodis pv. manihotis (Xam)

Diaz T, P., Zarate, C.A., Bernal Giraldo, A., Lopez, C.E.

https://repositorio.unal.edu.co/handle/unal/66699

2015

  • A genetic map of cassava (Manihot esculenta Crantz) with integrated physical mapping of immunity-related genes

Soto, J.C., Ortiz, J.F., Perlaza-Jiménez, L., Vásquez, A.X., Lopez-Lavalle, L.A., Mathew, B., Léon, J., Bernal, A.J., Ballvora, A., López, C.E.

https://doi.org/10.1186/s12864-015-1397-4

  • Physalis peruviana responses to Phytophthora infestans are typical of an incompatible interaction

Danies, G., Antolinez, C.A., Cantillo, J., Peña, G., Vargas, A.M., Cárdenas, M., Bernal, A.J., Restrepo, S.

https://doi.org/10.1080/07060661.2014.975157

2014

  • RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis.

Munoz-Bodnar, A., Perez-Quintero, A.L., Gomez-Cano, F., Gil, J., Michelmore, R., Bernal, A., Szurek, B., Lopez, C

https://doi.org/10.1007/s00299-014-1667-7

  • Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers

Trujillo, C.A., Arias-Rojas, N., Poulin, L., Medina, C.A., Tapiero, A., Restrepo, S., Koebnik, R., Bernal, A.J.

https://doi.org/10.1186/1471-2180-14-161

  • De novo pyrimidine biosynthesis in the oomycete plant pathogen Phytophthora infestans.

Garcia, L., Garavito, M., Gabriel, L., Vasquez, J. J., Myers, K., Fry, W. E., Bernal, A., Zimmermann, B., Restrepo, S.

https://doi.org/10.1016/j.gene.2013.12.009

  • A Complex Population Structure of the Cassava Pathogen Xanthomonas axonopodis pv. manihotis in Recent Years in the Caribbean Region of Colombia.

Trujillo, C. A., Ochoa, J. C., Mideros, M. F., Restrepo, S., López, C., & Bernal, A.

https://doi.org/10.1016/j.gene.2013.12.009

2013

  • Genomic Survey of Pathogenicity Determinants and VNTR Markers in the Cassava Bacterial Pathogen Xanthomonas axonopodis pv. manihotis Strain CIO151.

Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero AL, Poulin L, Díaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robène-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A.

https://doi.org/10.1371/journal.pone.0079704

  • Tell me a tale of TALEs.

Muñoz Bodnar, A., Bernal, A., Szurek, B., & López, C. E.

https://doi.org/10.1007/s12033-012-9619-3

  • TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants.

Castiblanco LF, Gil J, Rojas A, Osorio D, Gutiérrez S, Muñoz-Bodnar A, Perez-Quintero AL, Koebnik R, Szurek B, López C, Restrepo S, Verdier V, Bernal AJ

https://doi.org/10.1111/j.1364-3703.2012.00830.x